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Data from: Efficiency of ddRAD target enriched sequencing across spiny rock lobster species (Palinuridae: Jasus)
负责人:
关键词:
Jasus edwardsii;variant-calling file;probe sequences;Sagmariasus verreauxi;probes sequences
DOI:
doi:10.5061/dryad.3dk40
摘要:
Double digest restriction site-associated DNA sequencing (ddRADseq) and target capture sequencing methods are used to explore population
Data from: Efficient in situ barcode sequencing using padlock probe-based BaristaSeq
负责人:
关键词:
in situ sequencing
DOI:
doi:10.5061/dryad.5dd92
摘要:
approaches to reading out cellular barcodes trade off spatial resolution with throughput. Bulk sequencing achieves high throughput but sacrifices
Data from: The QRS (Quantification of Representative Sequences) pipeline for amplicon sequencing: case study on within-population ITS1
负责人:
关键词:
cloning\/sanger sequencing;ITS1 region;Caullerya mesnili;Amplicon Sequencing
DOI:
doi:10.5061/dryad.v7f7r
摘要:
Next generation sequencing (NGS) platforms are replacing traditional molecular biology protocols like cloning and Sanger sequencing. Howeve
Data from: RADcap: sequence capture of dual-digest RADseq libraries with identifiable duplicates and reduced missing data
负责人:
关键词:
Target Enrichment;Reduced Representation Libraries;3RAD;ddRAD;Wisteria;Illumina
DOI:
doi:10.5061/dryad.ss6c9
摘要:
methods, such as restriction site associated DNA sequencing (RADseq) and sequence capture, are constrained by costs associated with inefficient use
Data from: Special features of RAD Sequencing data: implications for genotyping
负责人:
关键词:
Genomics\/Proteomics;Caenorhabditis elegans;Population Ecology;Bioinfomatics\/Phyloinfomatics;Ecological Genetics;Heliconius melpomene
DOI:
doi:10.5061/dryad.218p2
摘要:
RAD Sequencing (RAD-Seq) is an economical and efficient method for SNP discovery and genotyping. As with other sequencing-by-synthesis methods
Data from: Unforeseen consequences of excluding missing data from next-generation sequences: simulation study of RAD sequences
负责人:
关键词:
RADtags;species delimitation;phylogenetic;Next-generation sequencing;RADseq;phylogeography
DOI:
doi:10.5061/dryad.jf361
摘要:
simulations, focusing specifically on RAD sequences, to highlight some of the unforeseen consequence of excluding missing data from next-generation sequencing
Data from: Reconstructing phylogeny from reduced-representation genome sequencing data without assembly or alignment
负责人:
关键词:
Quercus;alignment-free;assembly-free;RADseq;phylogenomics;missing data
DOI:
doi:10.5061/dryad.r0hq0
摘要:
Reduced-representation genome sequencing such as RADseq aids the analysis of genomes by reducing the quantity of data, thereby lowering bot
Data from: PSMC (pairwise sequentially Markovian coalescent) analysis of RAD (restriction site associated DNA) sequencing data
负责人:
关键词:
Pairwise Sequential Markovian Coalescent (PSMC);whole genome sequencing;threespine stickleback;demographic history;RAD sequencing
DOI:
doi:10.5061/dryad.0618v
摘要:
to reference genome-aligned restriction site associated DNA (RAD) data. We find that RAD data can potentially be used for PSMC analysis, but at present
Data from: EpiRADseq: scalable analysis of genome-wide patterns of methylation using next-generation sequencing
负责人:
关键词:
transgenerational shift;CpG methylation;Daphnia ambigua;EpiRADseq;epigenetics;high-throughput methylation measurement;Restriction-site Associated DNA Sequencing
DOI:
doi:10.5061/dryad.hs200
摘要:
restriction-site associated DNA sequencing-based method (ddRADseq), except that it utilizes a methylation-sensitive restriction enzyme. This method ther

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