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Data from: Resolution of a Supertree/Supermatrix Paradox
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Data from: Combining phylogenomic and supermatrix approaches, and a time-calibrated phylogeny for squamate reptiles (lizards and snakes) based on 52
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Reptiles;missing data;Mesozoic;phylogenomic;lizards;Squamata;phylogeny;chronogram;Cenozoic;Supermatrix;Snakes
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), or (ii) sample many species for fewer loci (e.g. supermatrix approach). In theory, these approaches can be combined to simultaneously resolve both higher
Data from: Building the avian tree of life using a large-scale, sparse supermatrix
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Birds;phylogeny;Aves;Supermatrix
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. We performed an unconstrained maximum likelihood analysis of a sparse supermatrix comprising 22 nuclear loci and seven mitochondrial regions from 6714 spe
Data from: Computational performance and statistical accuracy of *BEAST and comparisons with other methods
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Concatenation;Bayesian phylogenetics;Gene tree;Primates;Species tree;Pedicularis;Multispecies coalescent;Supermatrix;phylogenomics
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cies tree. In comparison, supermatrix concatenation methods assume that gene trees share a single common genealogical history, thereby equating gene coalescence
Data from: Terrace aware data structure for phylogenomic inference from supermatrices
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phylogenetic terraces;Supermatrix;partition models;maximum likelihood;phylogenomic inference;partial terraces
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In phylogenomics the analysis of concatenated gene alignments, the so-called supermatrix, is commonly accompanied by the assumption of partition
Data from: Construction of a species-level tree of life for the insects and utility in taxonomic profiling
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insects;data mining;Phyloinformatics;tree of life;data integration;phylogenomics
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of data that has been largely overlooked, yet presents a key obstacle to scaling supermatrix analysis. I present a phyloinformatics framework for draft
Data from: Resolving a phylogenetic hypothesis for parrots: implications from systematics to conservation
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biodiversity;Psittaciformes;Supermatrix;IUCN Red List;contemporary;phylogeography;conservation genetics
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systematic treatments. We inferred a concatenated tree with 307 species from a 30-gene supermatrix. We recovered well-supported relationships among recent
Data from: Specimens at the center: an informatics workflow and toolkit for specimen-level analysis of public DNA database data
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specimen-level data;Supermatrix;Cyperaceae;Carex;phylogenetic workflow;taxon disparity index
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h studies generally use only the taxonomic identity of the sequenced tissue, not the specimen identity. Thus studies that use DNA supermatrices to construct
Data from: Phylogenomics and historical biogeography of the monocot order Liliales: out of Australia and through Antarctica
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genera, and 97 additional plastomes stratified across angiosperm lineages. We used a supermatrix approach to extend our analysis to 58 of 64 gener

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