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Data from: Incomplete lineage sorting in mammalian phylogenomics
负责人:
关键词:
supertree;Coalescence;placental;phylogeny;exon
DOI:
doi:10.5061/dryad.1m3s2
摘要:
The impact of incomplete lineage sorting (ILS) on phylogenetic conflicts among genes, and the related issue of whether to account for ILS
Data from: Bayesian inference of reticulate phylogenies under the multispecies network coalescent
负责人:
Nakhleh, Luay
关键词:
coalescent phylogenetic networks hybridization incomplete lineage sorting Bayesian inference
DOI:
doi:10.5061/dryad.n2606
摘要:
g evidence of incomplete lineage sorting in phylogenomic analyses. However, the evolutionary history of a set of genomes, or species, could be reticulate due to
Data from: Coalescent-based species tree inference from gene tree topologies under incomplete lineage sorting by maximum likelihood
负责人:
关键词:
species tree estimation;Coalescent Theory;phylogenetics;maximum likelihood;incomplete lineage sorting
DOI:
doi:10.5061/dryad.240h7g8r
摘要:
Incomplete lineage sorting can cause incongruence between the phylogenetic history of genes (the gene tree) and that of the species (the species tree
Data from: Evaluating summary methods for multi-locus species tree estimation in the presence of incomplete lineage sorting
负责人:
关键词:
supertree methods;incomplete lineage sorting;Concatenation;species tree estimation;MRL;MRP;multilocus bootstrapping;gene tree estimation error;MP-EST;gene tree discordance
DOI:
doi:10.5061/dryad.310q3
摘要:
Species tree estimation is complicated by processes, such as gene duplication and loss and incomplete lineage sorting (ILS), that cause discordanc
Data from: Genomics of speciation and introgression in Princess cichlid fishes from Lake Tanganyika
负责人:
关键词:
whole genome sequencing;genomic landscapes;recombination bias;introgressive hybridization;Neolamprologus;Linked selection
DOI:
doi:10.5061/dryad.jr67t
摘要:
of incomplete lineage sorting, introgression and hybrid speciation in the Neolamprologus savoryi-complex (the ‘Princess cichlids’) from Lake Tanganyika. We present a ti
Data from: Parsimonious inference of hybridization in the presence of incomplete lineage sorting
负责人:
Nakhleh, Luay
关键词:
phylogenetic networks gene trees hybridization incomplete lineage sorting coalescent multi-labeled trees
DOI:
doi:10.5061/dryad.sr534
摘要:
on. However, methods that follow this approach mostly ignore population effects, such as incomplete lineage sorting (ILS). Given that hybridization occurs bet
Data from: Large-scale ruminant genome sequencing provides insights into their evolution and distinct traits
负责人:
关键词:
DOI:
doi:10.5061/dryad.52213gc
摘要:
s of incomplete lineage sorting. Population dynamic analyses show that population declines commenced between 100,000 and 50,000 years ago, which is concomitant with expansion
Data from: Species tree of a recent radiation: the subfamily Delphininae (Cetacea, Mammalia)
负责人:
关键词:
Species tree;incomplete lineage sorting;Delphinidae;rapid radiation;hybridization;speciation
DOI:
doi:10.5061/dryad.6dr0475t
摘要:
t incomplete lineage sorting and possibly hybridization are confounding the inference of species history in this group. Nonetheless, using coalescent-based methods, we hav
Data from: Deep phylogenetic incongruence in the angiosperm clade Rosidae
负责人:
关键词:
incomplete lineage sorting;Fabidae;Incongruence;hybridization;Rosidae;COM clade;introgression;phylogenomics;Malvidae
DOI:
doi:10.5061/dryad.7sg58
摘要:
support COM outside a clade of Fabidae and Malvidae. Although incomplete lineage sorting and ancient introgressive hybridization remain as plausible
Data from: Detecting hybridization by likelihood calculation of gene tree extra lineages given explicit models
负责人:
Olave, Melisa
关键词:
hybridization gene flow deep coalescence likelihood model-based analysis
DOI:
doi:10.5061/dryad.q084s
摘要:
o known as incomplete lineage sorting [ILS]), as well as different evolutionary processes such as hybridization, horizontal gene transfer and gene duplication. Among these, deep

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