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Data from: Efficient detection of repeating sites to accelerate phylogenetic likelihood calculations
负责人:
关键词:
Algorithms;maximum likelihood;phylogenetics;phylogenetic likelihood function
摘要:
The phylogenetic likelihood function is the major computational bottleneck in several applications of evolutionary biology suc
Data from: Penalized likelihood methods improve parameter estimates in occupancy models
负责人:
关键词:
penalized likelihood;boundary estimates;maximum likelihood;summer 2011;occupancy modeling;detection probability;parameter estimation
摘要:
is popular in the literature, problems can occur when estimating the model parameters. In particular, the maximum likelihood estimates can exhibit bias and lar
Data from: Coalescent-based species tree inference from gene tree topologies under incomplete lineage sorting by maximum likelihood
负责人:
关键词:
species tree estimation;Coalescent Theory;phylogenetics;maximum likelihood;incomplete lineage sorting
摘要:
with maximum likelihood. I first describe an improved method for computing the probability of a gene tree topology given a species tree, which is much faster tha
Data from: SATé-II: very fast and accurate simultaneous estimation of multiple sequence alignments and phylogenetic trees
负责人:
关键词:
SATé;maximum likelihood;phylogenetics;alignment
摘要:
d maximum likelihood methods that treat gaps as missing data to estimate trees, and because we found a correlation between the quality of tree/alignment pairs
Data from: A gateway for phylogenetic analysis powered by grid computing featuring GARLI 2.0
负责人:
关键词:
GARLI;grid computing;maximum likelihood;phylogenetics;portal;Web service;molecular evolution;gateway
摘要:
We introduce molecularevolution.org, a publicly available gateway for high-throughput, maximum likelihood phylogenetic analysis powered
Data from: Automation and evaluation of the SOWH test with SOWHAT
负责人:
关键词:
topology test;SOWH test;phylogenetics
摘要:
ed to determine if the maximum likelihood tree in a phylogenetic analysis is significantly different than an alternative hypothesis. The SOWH test compares
Data from: Probabilistic methods surpass parsimony when assessing clade support in phylogenetic analyses of discrete morphological data
负责人:
关键词:
phylogenetic analysis;morphology;Mk Model;parsimony;Bayesian;maximum likelihood
摘要:
phylogenetic methods in terms of clade support. We characterize clade support using bootstrapping for parsimony and Maximum Likelihood, and intrinsic Bayesian
Data from: Equivalence between step selection functions and biased correlated random walks for statistical inference on animal movement
负责人:
关键词:
Animal movement biased walk models step selection functions Lagrangian methods maximum likelihood estimation
摘要:
cond, we illustrated the link between the two approaches by fitting BCRW with maximum likelihood and with SSF to simulated movement data in virtual environments

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