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Data from: Rapid microsatellite isolation from a butterfly by de novo transcriptome sequencing: performance and a comparison with AFLP-derived
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关键词:
Euphydryas editha;454;SSR;Next-generation sequencing;EST;variable number sequence repeats;simple sequence repeats;VNTR
摘要:
). PRINCIPAL FINDINGS: By searching the assembled sequence data for perfect microsatellite repeats we found 10 polymorphic loci. Although, like ma
riod: Its admixture-like genetic structure is the result of simple population splitting not admixing
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关键词:
Betula maximowicziana;Genetic structure;simple sequence repeats;demographic inference;Holocene
摘要:
tic structure of 48 populations of Betula maximowicziana was assessed using 12 expressed sequence tag–simple sequence repeat (EST-SSR) markers. Genetic diversi
Resources Notes Accepted 1 June 2015 to 31 July 2015
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T2T\/G2T;Scomber scombrus;Transcriptomics;bioinformatics;genomics;SNP discovery;Next-generation sequencing
摘要:
were discovered. In all, 479 putative SNPs and 1,624 simple sequence repeats (SSRs) suitable for genotyping were identified. A subset of 96 was se
Data from: Comparative transcriptome resources of eleven Primulina species, a group of “stone plants” from a biodiversity hotspot
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关键词:
Primulina;transcriptome;positive selection;simple sequence repeats;single nucleotide polymorphisms;single-copy nuclear genes
摘要:
ssfully annotated and 256 601 (72%) were identified as coding sequences (CDSs). We identified a total of 38 279 simple sequence repeats (SSRs) and 367 123
Data from: Cross-species transferability of SSR loci developed from transcriptome sequencing in lodgepole pine
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关键词:
454;SSR;Pinus ponderosa;EST;Pinus contorta
摘要:
s for the discovery of gene-based molecular markers. In a previous study more than 15 000 simple sequence repeats (SSRs) in expressed sequence tag (EST) sequences res
Data from: The plover neurotranscriptome assembly: transcriptomic analysis in an ecological model species without a reference genome
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关键词:
Charadrius alexandrinus;de novo transcriptome assembly;behavioural transcriptomics;Neurogenomics;SNP discovery;sex-biased gene expression
摘要:
, we identified >31 000 high-quality SNPs and > 2500 simple sequence repeats (SSRs). We also analysed expression patterns in our data to identify potential
Data from: RUNX2 tandem repeats and the evolution of facial length in placental mammals
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关键词:
Placentalia;Comparative Methods;Mammalia;mammalian evolution;morphology;Afrotheria;Primates;Xenarthra;prognathism;molecular evolution
摘要:
BACKGROUND: When simple sequence repeats are integrated into functional genes, they can potentially act as evolutionary 'tuning knobs', supplying
Data from: Genetic structure and demographic history of the endangered tree species Dysoxylum malabaricum (Meliaceae) in Western Ghats, India
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摘要:
ss the impact of human activities on genetic diversity and infer the species’ evolutionary history, using both nuclear and chloroplast (cp) DNA simple sequence repeats (SSR). As genetic diversi

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